species:   Scscl
pid:       PID1722
parent:    Ssc-milR-198
paralog:   
locus:     NW_001820833.1:2373003-2373094
matures:   ['UUUUUUUUUUUUUUUUUUUUUUU', 'GGAAAGAAGAGGAAGGAAAAGCA']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820833.1:2373003-2373094

12 out of bounds
21 alignments
15 proper strand
15 stranded perfect matches

                 ************************              ************************             
GCAUGCUUGUUUUUUUUUUUUUUUUUUUUUUUUUUUUAAUGAAAGAAAAGGGAAAGAUGAAAGAGAGGAAAGAAGAGGAAGGAAAAGCAGCC
....(((.(((((((((((((((((((((((((((((.((................)).)))))))))))))))))))))))))))))))).
---------UUUUUUUUUUUUUUUUUUUUUUU------------------------------------------------------------ l=23 a=0 c
------------------------------------------------------------------GGAAAGAAGAGGAAGGAAAAGCA--- l=23 a=0 c*
---------------------------------------------------------UGAAAGAGAGGAAAGAAGAGGA------------- l=22 a=3 ma
-------------------UUUUUUUUUUUUUUUUUUAAUG--------------------------------------------------- l=22 a=0 ma*

---------------------------------------------------------UGAAAGAGAGGAAAGAAGAG--------------- l=20 a=1 
---------------------------------------------------------UGAAAGAGAGGAAAGAAGAGG-------------- l=21 a=2 
---------------------------------------------------------UGAAAGAGAGGAAAGAAGAGGA------------- l=22 a=3 (ma)
----------------------------------------------AAAGGGAAAGAUGAAAGAGAGG------------------------ l=22 a=1 
---------------------------------------UGAAAGAAAAGGGAAAGAUGAAA------------------------------ l=23 a=2 
------------------------------------UAAUGAAAGAAAAGGGAAA------------------------------------- l=19 a=1 
----------------------------------UUUAAUGAAAGAAAAGGGAAAG------------------------------------ l=22 a=1 
---------------------------------UUUUAAUGAAAGAAAAGGGAAA------------------------------------- l=22 a=1 
-------------------------------UUUUUUAAUGAAAGAAAAGGGA--------------------------------------- l=22 a=1 
------------------------------UUUUUUUAAUGAAAGAAAAGG----------------------------------------- l=21 a=1 
-----------------------------UUUUUUUUAAUGAAAGAAAAGG----------------------------------------- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-111110111100
fn-101
